PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_477D676E5.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 373aa    MW: 41906.5 Da    PI: 7.9643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_477D676E5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-092444526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            C f++r G C+yG+rC++ H+
  Traes_7AS_477D676E5.2 24 VCTFYQR-GSCSYGNRCRYDHV 44
                           5999999.*************7 PP

2zf-CCCH21.83.3e-07155177326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            +++C+ fa++G C+yG+ C+ +Hg
  Traes_7AS_477D676E5.2 155 MPICS-FAAGGNCPYGEECPHMHG 177
                            68999.**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.803118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2671946IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-42145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-52143IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-62444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-42443IPR000571Zinc finger, CCCH-type
SMARTSM003560.015152178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76152179IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4155177IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.08E-10210285No hitNo description
Gene3DG3DSA:3.30.40.101.0E-9214280IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136393.5E-7220279IPR001841Zinc finger, RING-type
CDDcd001620.00105220280No hitNo description
SMARTSM001842.9E-7221278IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297221279IPR001841Zinc finger, RING-type
PROSITE patternPS005180245254IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.01308336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648308337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MHGACLKGEY CEFSHDWSDQ ANNVCTFYQR GSCSYGNRCR YDHVKVSRNN PVPPLPSSSI  60
ATRNSPVRPP PSSSTATHVA STSPQLLSSG RPLHLGHQTN SSNQRQQISM DKLAVSESKP  120
AWRNEVQLDS VSEDGIGWSS IQTAQNQTSM KLADMPICSF AAGGNCPYGE ECPHMHGDLC  180
AFCGKMCLHP YRPDERQEHI KLCEKNHKRL EALKRSQEIE CSVCLDRVLS KPTAAERKFG  240
LLSECDHPFC ISCIRNWRGN SPTSGMDVNS ALRACPICRK LSYYVIPSVL WYFSKEEKLE  300
ITENYKAKLK SIDCKYFDFG TGTCPFGTSC FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK  360
NIRLSDFLGR LHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563906.10.0PREDICTED: E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_010227725.10.0PREDICTED: E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_010227726.10.0PREDICTED: E3 ubiquitin-protein ligase makorin isoform X1
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLW5HEB30.0W5HEB3_WHEAT; Uncharacterized protein
STRINGMLOC_63870.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-120C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]